miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST051555
species: Pinus taeda
miRNA family: MIR159
source: PMRD, original name: pta-miR159c

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTGGATTGAAGGGAGCTCCC

miRNA*
GAGCTGATTTTGTCCAGGA

mismatches: 3
bulges: 2

View larger
pre-miRNA
GATGTGTGAATGATGCGGGAGCTGATTTTGTCCAGGAAATGTCTTTTCCTTGGATTGAAGGGAGCTCCCTTATGTAGCATACATT

dot-bracket secondary structure
((((((((....(((.(((((((..(((.((((((((((.....))))).))))).)))...))))))).)))....))))))))


SIMILARITIES
miRBase pta-MIR159c: 4e-43

PMRD smo-miR159: 0.000001

microPC miR319: 0.000004
UniProt no hits

RFAM MIR159: 0.00007

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"




Liczniki na strone;