ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR319
source: PMRD, original name: pta-miR319
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGACTGAAGGGAGCTCC miRNA* AGCTCCCTTCAATCCAAGA mismatches: 1 bulges: 0 |
pre-miRNA
AGATAAGTGGAGCTCCCTTCAATCCAAGAAATGCGTGTTTAGTGACAGTACATCTCCTGCGTCATGCACACCACTATCCTGTCATGCAGGTCGATTGATTG
ATTTGTTCAGGCTGCTGGAGAGTCACGGACAGGGAAGTAGAATGCATGAATCAGCAGCTGAACCACCGCTGCACAAGCTTTGGTTGGACTGAAGGGAGCT
CCAACA
dot-bracket secondary structure
)......((((((((((((((.(((((..((.((.(((.(((((...((...((..((((.(((((((..(.(((.(((((((..(((((((((....)))
))))))...((((.......))))...))))))).))).)..)))))))....))))..))))...))))).))).)).))..))))).)))))))))))
)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
AGATAAGTGGAGCTCCCTTCAATCCAAGAAATGCGTGTTTAGTGACAGTACATCTCCTGCGTCATGCACACCACTATCCTGTCATGCAGGTCGATTGATTG
ATTTGTTCAGGCTGCTGGAGAGTCACGGACAGGGAAGTAGAATGCATGAATCAGCAGCTGAACCACCGCTGCACAAGCTTTGGTTGGACTGAAGGGAGCT
CCAACA
dot-bracket secondary structure
)......((((((((((((((.(((((..((.((.(((.(((((...((...((..((((.(((((((..(.(((.(((((((..(((((((((....)))
))))))...((((.......))))...))))))).))).)..)))))))....))))..))))...))))).))).)).))..))))).)))))))))))
)))...
SIMILARITIES| miRBase pta-MIR319: 7.0E-115 PMRD pta-miR159a: 7.0E-115 microPC miR319: 2.0E-108 | UniProt no hits RFAM 9MIR159: 1.0E-5 |
Identical with: pta-miR159a from PMRD (MNEST051553), pta-MIR319 from miRBase , pta-MIR159a from miRBase , miR319 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
