ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR396
source: PMRD, original name: pta-miR396
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTT miRNA* GTTCAAGAAAACTGTGGGAAA mismatches: 1 bulges: 0 |
pre-miRNA
CGAATCTTGTCATACTTTTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGAAAACTGTG
GGAAAGCATGGTAGGATTC
dot-bracket secondary structure
)(((((((..(((.(((((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..)))))))))))))).)))))
)))))).)))..)))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
CGAATCTTGTCATACTTTTCCACAGCTTTCTTGAACTTTACGTGTACGGGACGAGGAGATTCTGATTTCTACGTCTGCGATTAAAGTTCAAGAAAACTGTG
GGAAAGCATGGTAGGATTC
dot-bracket secondary structure
)(((((((..(((.(((((((((((.((((((((((((((..(((...(((((.((((((....)))))).))))))))..)))))))))))))).)))))
)))))).)))..)))))))
SIMILARITIES| miRBase pta-MIR396: 3.0E-63 PMRD ath-miR396b: 1.0E-10 microPC miR396: 4.0E-44 | UniProt no hits RFAM 6MIR396: 5.0E-53 |
Identical with: pta-MIR396 from miRBase (MNEST039426), miR396 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
