ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR950
source: PMRD, original name: pta-miR950a
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCAGGTCCTCGGTGGTTTAT miRNA* AAACCATCGTGGAGCCGATG mismatches: 3 bulges: 0 |
pre-miRNA
CGGAAGGTGATCTTTACATCAGGTCCTCGGTGGTTTATTGCTCATCGTTTGTTTATAATAAACCATCGTGGAGCCGATGAAAAGAGCACCTCC
dot-bracket secondary structure
)(((.((((.(((((.((((.(.(((.(((((((((((((..((.....))....))))))))))))).))).).)))).))))).)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
CGGAAGGTGATCTTTACATCAGGTCCTCGGTGGTTTATTGCTCATCGTTTGTTTATAATAAACCATCGTGGAGCCGATGAAAAGAGCACCTCC
dot-bracket secondary structure
)(((.((((.(((((.((((.(.(((.(((((((((((((..((.....))....))))))))))))).))).).)))).))))).)))))))
SIMILARITIES| miRBase pta-MIR950a: 3.0E-47 PMRD pta-miR950b: 4.0E-40 microPC miR950: 1.0E-27 | UniProt no hits RFAM no hits |
Identical with: miR950 from microPC (MNEST045061), pta-MIR950a from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Amerson H, Chiang VL, Plant J. 51:1077-1098(2007)., "MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development"
