ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR167_1
source: PMRD, original name: ptc-miR167h
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAACATGATCTG miRNA* GATCATGTGGCAGTTTCACC mismatches: 0 bulges: 1 |
pre-miRNA
ACGCTATTAGTTGAAGCTGCCAACATGATCTGAGCTTTCCTTAATTTTCCTATACAGGAAAGACTAGATCATGTGGCAGTTTCACCTATTGA
dot-bracket secondary structure
)......(((.(((((((((((.(((((((((..(((((((..............)))))))..)))))))))))))))))))).)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
ACGCTATTAGTTGAAGCTGCCAACATGATCTGAGCTTTCCTTAATTTTCCTATACAGGAAAGACTAGATCATGTGGCAGTTTCACCTATTGA
dot-bracket secondary structure
)......(((.(((((((((((.(((((((((..(((((((..............)))))))..)))))))))))))))))))).)))....
SIMILARITIES| miRBase ptc-MIR167h: 1.0E-46 PMRD ptc-miRf10178-akr: 1.0E-46 microPC miR167: 4.0E-6 | UniProt no hits RFAM 1MIR167_1: 7.0E-30 |
Identical with: ptc-miRf10178-akr from PMRD (MNEST052000), ptc-MIR167h from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
