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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051680
species: Populus trichocarpa
miRNA family: MIR169_1
source: PMRD, original name: ptc-miR169w

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGCCAAGGATGACTTGCCCA

miRNA*
 GGCAGTCACCTTGGCTATG

mismatches: 0
bulges: 2
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pre-miRNA
 CGTGTTTGGTAGCCAAGGATGACTTGCCCACTCTATGGAAAGAGTTCTCAAGCACACGGCAGAGAGGACCCTTACTTCGGCTCTGGGCAGTCACCTTGGC
TATGCTGAC

dot-bracket secondary structure
........((((((((((.(((((.(((((..((..((.(((.((((((..((.....))...)))))).))).))..))...)))))))))))))))))
)))......


SIMILARITIES
miRBase ptc-MIR169w: 3e-57

PMRD ptc-miR169v: 2e-17

microPC miR169: 0.00008		UniProt no hits

RFAM MIR169_5: 4e-56

Identical with: ptc-MIR169w from miRBase (MNEST041377)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"



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