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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051694
species: Populus trichocarpa
miRNA family: MIR171_1
source: PMRD, original name: ptc-miR171k

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGATTGAGCCGCGCCAATATC

miRNA*
 TACTGGCTCGGTTCAACCTCA

mismatches: 3
bulges: 0
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pre-miRNA
 GATACTGGCTCGGTTCAACCTCATCGTAGTCTTGATGAATGATTCAAATCTATGGTTGGATTGAGCCGCGCCAATATC

dot-bracket secondary structure
((((.((((.((((((((.((.(((((((..((((........))))..))))))).)).)))))))).)))).))))


SIMILARITIES
miRBase ptc-MIR171k: 5e-39

PMRD ptc-miR171j: 7e-20

microPC miR171: 0.0002		UniProt no hits

RFAM MIR171_1: 1e-37

Identical with: ptc-MIR171k from miRBase (MNEST041391)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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