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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051795
species: Populus trichocarpa
miRNA family: MIR478
source: PMRD, original name: ptc-miR478r

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAACGTGTCTCCTATTTTTAGGGA

miRNA*
TCCTAGTTTGAGGGACTGATATC

mismatches: 5
bulges: 3

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pre-miRNA
AGTCTCCTAGTTTGAGGGACTGATATCATTTTTAACGTGTCTCCTATTTTTAGGGACC

dot-bracket secondary structure
.(((.(((((....((((((((.((.......)).)).))).)))....)))))))).


SIMILARITIES
miRBase ptc-MIR478r: 3e-27

PMRD ptc-miR478u: 2e-16

microPC no hits
UniProt no hits

RFAM MIR478: 0.000000000000003

Identical with: ptc-MIR478r from miRBase (MNEST041496)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
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references

[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"




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