ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR478
source: PMRD, original name: ptc-miR478r
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAACGTGTCTCCTATTTTTAGGGA miRNA* TCCTAGTTTGAGGGACTGATATC mismatches: 5 bulges: 3 |
pre-miRNA
AGTCTCCTAGTTTGAGGGACTGATATCATTTTTAACGTGTCTCCTATTTTTAGGGACC
dot-bracket secondary structure
.(((.(((((....((((((((.((.......)).)).))).)))....)))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
AGTCTCCTAGTTTGAGGGACTGATATCATTTTTAACGTGTCTCCTATTTTTAGGGACC
dot-bracket secondary structure
.(((.(((((....((((((((.((.......)).)).))).)))....)))))))).
SIMILARITIES| miRBase ptc-MIR478r: 3e-27 PMRD ptc-miR478u: 2e-16 microPC no hits | UniProt no hits RFAM MIR478: 0.000000000000003 |
Identical with: ptc-MIR478r from miRBase (MNEST041496) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"
