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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST051815
species: Populus trichocarpa
miRNA family: MIR1446
source: PMRD, original name: ptc-miR1446c

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCTGAACTCTCTCCCTCAA

miRNA*
 AAGGTGGGAGGCTCAGAAAA

mismatches: 3
bulges: 2
View larger
pre-miRNA
 CCAACTTTTTCTGAACTCTCTCCCTCAACTGCTATTCTAGAGCTTCCTGAGCTAACCCTTGTGTTTCTGTGTAGCAGTCAAGGTGGGAGGCTCAGAAAAT
GTTGG

dot-bracket secondary structure
(((((.((((((((.(.((((((((..((((((((.(..((((....((((......)))).))))..).))))))))..))).)))))).)))))))).
)))))


SIMILARITIES
miRBase ptc-MIR1446c: 6e-55

PMRD ptc-miR1446e: 4e-19

microPC no hits		UniProt no hits

RFAM MIR1446: 1e-53

Identical with: ptc-MIR1446c from miRBase (MNEST041518)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references
[1] Lu S, Sun YH, Chiang VL, Plant J. 55:131-151(2008)., "Stress-responsive microRNAs in Populus"



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