ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-154
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCACACAAAGGCAACTTTTGT miRNA* AGAGGTTGCCCTTGGTGAATT mismatches: 2 bulges: 1 |
pre-miRNA
GACGTTTGATTCTTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTGATGTTGAATCACACAAAGGCAACTTTTGTTTGAGTATCAAAGCC
dot-bracket secondary structure
....((((((.(((((((((((((((((.(((((((.((.((.((...)).)).)).)))).))).))))))))))))))))).))))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
additional data
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GACGTTTGATTCTTGAGCAGAGGTTGCCCTTGGTGAATTCGCTTTATTGATGTTGAATCACACAAAGGCAACTTTTGTTTGAGTATCAAAGCC
dot-bracket secondary structure
....((((((.(((((((((((((((((.(((((((.((.((.((...)).)).)).)))).))).))))))))))))))))).))))))...
SIMILARITIES| miRBase oar-mir-377: 7e-39 PMRD no hits microPC no hits | UniProt no hits RFAM mir-154: 2e-30 | most similar mature miRNAs |
Identical with: mmu-mir-377 from miRBase (MNEST032048) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
additional data
download this record
