ABOUT THIS RECORDspecies: Mus musculus
miRNA family: mir-335
source: miRNEST
Taxonomy by NCBI:
Mus musculus Mus Mus Murinae Muridae Muroidea Sciurognathi Rodentia Glires Euarchontoglires Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTTTCATTATTGCTCCTGACC miRNA* TCAAGAGCAATAACGAAAAATG mismatches: 2 bulges: 0 |
pre-miRNA
AACAGATTGGAAAAGATTTCTTTTGGGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTTTTTCGTAAACCGTTTTTCATTATTGCTCCTGACCCCCTC
TCATGGGTTATAGCCAGTCGAGTAA
dot-bracket secondary structure
....((((((.....((..(((.((((.((((((((.(((((((((.((((((((((((.......)))).)))))))).))))))))).)))))))).)
))).)))..))..))))))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
additional data
download this record
deep sequencing data evidence
AACAGATTGGAAAAGATTTCTTTTGGGCGGGGGTCAAGAGCAATAACGAAAAATGTTTGTTTTTCGTAAACCGTTTTTCATTATTGCTCCTGACCCCCTC
TCATGGGTTATAGCCAGTCGAGTAA
dot-bracket secondary structure
....((((((.....((..(((.((((.((((((((.(((((((((.((((((((((((.......)))).)))))))).))))))))).)))))))).)
))).)))..))..))))))......
SIMILARITIES| miRBase mmu-mir-335: 1e-50 PMRD no hits microPC no hits | UniProt no hits RFAM mir-335: 6e-25 | most similar mature miRNAs |
Identical with: mmu-mir-335 from miRBase (MNEST032000) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
additional data
download this record
deep sequencing data evidence
