ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10393-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCGATATGTATCCCAACATTG miRNA* ATGTTGGGATTGGTATCGAGACA mismatches: 2 bulges: 0 |
pre-miRNA
AATATTTTACCAATGTTGGGATTGGTATCGAGACATGCTTAATACTTACCAATGTTGCTAACTTACCAATCTCCATGTTTCCAAAACCATGATGAAGGCA
AGTATTAAGCAAGTCTCGATATGTATCCCAACATTGATAAACTGTT
dot-bracket secondary structure
((((.((((.((((((((((((..((((((((((.((((((((((((.((...((.....)).......((..((((..........))))..)).)).)
))))))))))).))))))))))..)))))))))))).)))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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AATATTTTACCAATGTTGGGATTGGTATCGAGACATGCTTAATACTTACCAATGTTGCTAACTTACCAATCTCCATGTTTCCAAAACCATGATGAAGGCA
AGTATTAAGCAAGTCTCGATATGTATCCCAACATTGATAAACTGTT
dot-bracket secondary structure
((((.((((.((((((((((((..((((((((((.((((((((((((.((...((.....)).......((..((((..........))))..)).)).)
))))))))))).))))))))))..)))))))))))).)))).))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf11699-akr: 3e-79 microPC no hits | UniProt no hits RFAM snoR71: 2e-16 |
Identical with: ptc-miRf10392-akr from PMRD (MNEST052214) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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