ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10395-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGGGATAAGGGCCTGTCC miRNA* TGGGTCCATTCCTTAAGG mismatches: 4 bulges: 1 |
pre-miRNA
CAAGGTTGGGTCCATTCCTTAAGGAAGCCTAGGGAAGAATGATAATTCATCTGAGGGTGTTGTTCAAAGGATGTTGGGTCCATCTCTTGGGAGAGCCTTA
GGGATAAGGGCCTGTCCCTTG
dot-bracket secondary structure
(((((.(((((((..(((((((((...((((((((.(((..(((.(((....)))..)))..)))...((((.....)))).)).))))))....)))))
))))...)))))))..)))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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CAAGGTTGGGTCCATTCCTTAAGGAAGCCTAGGGAAGAATGATAATTCATCTGAGGGTGTTGTTCAAAGGATGTTGGGTCCATCTCTTGGGAGAGCCTTA
GGGATAAGGGCCTGTCCCTTG
dot-bracket secondary structure
(((((.(((((((..(((((((((...((((((((.(((..(((.(((....)))..)))..)))...((((.....)))).)).))))))....)))))
))))...)))))))..)))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
