ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10399-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGACCCAAGAGCGTTGGGTCTGGC miRNA* GCAGACCCAGTTCTCTTGGGTCTTG mismatches: 2 bulges: 1 |
pre-miRNA
GGAGTGGCAGGAGCGCAGACCCAGTTCTCTTGGGTCTTGCAGCCCCACTTGGCCCAATACACTAGGAGCAGGCGTCTAAACCCAAGCTTAGGTTTGCCTG
CAGTGCTAGACCCAAGAGCGTTGGGTCTGGCTGCAACTTC
dot-bracket secondary structure
(((((.(((...((.(((((((((..(((((((((((.((((((......)))..............(((((((....((((........))))))))))
)..))).)))))))))))..)))))))))))))).)))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
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GGAGTGGCAGGAGCGCAGACCCAGTTCTCTTGGGTCTTGCAGCCCCACTTGGCCCAATACACTAGGAGCAGGCGTCTAAACCCAAGCTTAGGTTTGCCTG
CAGTGCTAGACCCAAGAGCGTTGGGTCTGGCTGCAACTTC
dot-bracket secondary structure
(((((.(((...((.(((((((((..(((((((((((.((((((......)))..............(((((((....((((........))))))))))
)..))).)))))))))))..)))))))))))))).)))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf12069-akr: 0.0000000005 microPC no hits | UniProt no hits RFAM MIR474: 5e-41 |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
