miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST052225
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10403-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCGATTCTGGACTGGGCAGC

miRNA*
 TGCCGATGCAGAAATCGGCA

mismatches: 2
bulges: 2
View larger
pre-miRNA
 GTTTTCGCTGCCGATGCAGAAATCGGCAGCGACGCAGTTTTCGCTGCCGATGCAGAAATCAGCAGCGATGCAGTATTCGCTGCCGATTCTGGACTGGGCA
GCGATGC

dot-bracket secondary structure
....((((((((.((.(((((.((((((((((.((.((..(((((((.(((......))).))))))).)).))..))))))))))))))).).).))))
))))...


SIMILARITIES
miRBase no hits

PMRD ptc-miRf12422-akr: 3e-44

microPC no hits		UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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