ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10406-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTTCAGGCCATCCAGGCT miRNA* CCCAGGCCGGCCTGATTGATGT mismatches: 5 bulges: 2 |
pre-miRNA
GGCTGCGGCCCAGGCCGGCCTGATTGATGTCCGAGAGCAGGGCTGCCATTTCCGCCTTGCTAGGCAACTGCTTTTCCAGCTGCGTCACATATTGCTGCAC
CTGCTCACGTTGCTTCTTCAGGCCATCCAGGCTGACGGCC
dot-bracket secondary structure
((((((((((..((..(((((((..((.((.((.(((((((((.((.......((((....))))....(((.....))).............)).)).)
)))))).))..)).)).)))))))..)).))))).)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
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GGCTGCGGCCCAGGCCGGCCTGATTGATGTCCGAGAGCAGGGCTGCCATTTCCGCCTTGCTAGGCAACTGCTTTTCCAGCTGCGTCACATATTGCTGCAC
CTGCTCACGTTGCTTCTTCAGGCCATCCAGGCTGACGGCC
dot-bracket secondary structure
((((((((((..((..(((((((..((.((.((.(((((((((.((.......((((....))))....(((.....))).............)).)).)
)))))).))..)).)).)))))))..)).))))).)))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
download this record
