miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides

ABOUT THIS RECORD

ID: MNEST052234
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10412-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
GCAGCAAATCCGTTTTCGCTG

miRNA*
GCGAATCAGGTGTTCACTGCCA

mismatches: 5
bulges: 1

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pre-miRNA
TCTGCAGCGAATCAGGTGTTCACTGCCAAATTATAGTGTCCGCAGCGAATCAGTTTTCGCTGCCGAATTGTGGTGTCTGCAGCAAATCCGTTTTCGCTGT
TGA

dot-bracket secondary structure
((.((((((((...((.(((..((((...((((((((.((.((((((((......)))))))).))))))))))....))))..)))))...))))))))
.))

SIMILARITIES

miRBase no hits

PMRD ptc-miRf10204-akr: 2e-17

microPC no hits

UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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