miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST052244
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10422-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AACCGCTGCCTCCAGTGTCT

miRNA*
 CACTGGATGCAGAGGTTTA

mismatches: 2
bulges: 1
View larger
pre-miRNA
 GGGAAGCACTGGATGCAGAGGTTTATCGATCGGTTCGTGTTGTTCGTGTAAAACAAAAAAATCTTCAGGAAAAGATCGATGAACCGCTGCCTCCAGTGTC
TTCTC

dot-bracket secondary structure
(((((((((((((.((((.((((((((((((..(((.((...((..((.....))..))......)).)))..)))))))))))).)))).))))))).)
)))))


SIMILARITIES
miRBase ptc-MIR162c: 2e-42

PMRD ptc-miRf10675-akr: 2e-42

microPC miR162: 0.000000000005		UniProt no hits

RFAM MIR162_2: 8e-33

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record




Liczniki na strone;