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Species belonging to selected taxon:
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Populus trichocarpa
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST052259
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf10437-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CAGCCAGATCCAGTGCTATTGGG
miRNA*
CAATAGCATTCGGTCTGGCGGTT
mismatches:
2
bulges:
0
View larger
pre-miRNA
GACGGATT
CAATAGCATTCGGTCTGGCGGTT
AAGAAGTTCAAAAGTTGTTGGGTTTGGCTGGG
CAGCCAGATCCAGTGCTATTGGG
TCCTGTT
dot-bracket secondary structure
((((((((
((((((((((.((((((((.((.
.((.((..(((......)))..))...))..)
).)))))))).))))))))))))
))).)))
SIMILARITIES
miRBase
ptc-MIR474b
:
9e-26
PMRD
ptc-miR474b
:
9e-26
microPC
no hits
UniProt
no hits
RFAM
MIR474: 2e-24
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record