ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10575-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCTGATGGTGCTCTTTCA miRNA* AAAGGGACACAGGTCAGGATATG mismatches: 1 bulges: 3 |
pre-miRNA
CTTTCTGAAAGGGACACAGGTCAGGATATGTCATTTGCAGATGCTAAGATATTTCGATTTGGAGATGGAGGCTGTGAGGATAGATTAAGTGACATTTCTG
ATGGTGCTCTTTCAGTGGG
dot-bracket secondary structure
((..(((((((((.(((..(((((((.((((((((((...((.((.((.((((((......))))))....))...)).))....)))))))))))))))
)).))))))))))))..))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CTTTCTGAAAGGGACACAGGTCAGGATATGTCATTTGCAGATGCTAAGATATTTCGATTTGGAGATGGAGGCTGTGAGGATAGATTAAGTGACATTTCTG
ATGGTGCTCTTTCAGTGGG
dot-bracket secondary structure
((..(((((((((.(((..(((((((.((((((((((...((.((.((.((((((......))))))....))...)).))....)))))))))))))))
)).))))))))))))..))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
