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Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST052399
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10577-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AACCGCTGCCTCCAGTGTCT

miRNA*
 CGCTGGATGCAGAGGTTTA

mismatches: 2
bulges: 1
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pre-miRNA
 GGAAGCGCTGGATGCAGAGGTTTATCGATCGGTTCATGTTTTTCGTGCTAAACAAAAAATTGGCCAGGAAGAGATCGATGAACCGCTGCCTCCAGTGTCT
TCC

dot-bracket secondary structure
((((((((((((.((((.((((((((((((..(((.((........(((((........))))))).)))..)))))))))))).)))).))))))).))
)))


SIMILARITIES
miRBase ptc-MIR162a: 9e-54

PMRD ptc-miRf10578-akr: 9e-54

microPC miR162: 1e-43		UniProt no hits

RFAM MIR162_2: 2e-45

Identical with: ptc-miR162a from PMRD (MNEST051616)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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