ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10578-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCGATGAACCGCTGCCTCC miRNA* ATGCAGAGGTTTATCGATCG mismatches: 2 bulges: 0 |
pre-miRNA
GGAAGCGCTGGATGCAGAGGTTTATCGATCGGTTCATGTTTTTCGTGCTAAACAAAAAATTGGCCAGGAAGAGATCGATGAACCGCTGCCTCCAGTGTCT
TCC
dot-bracket secondary structure
((((((((((((.((((.((((((((((((..(((.((........(((((........))))))).)))..)))))))))))).)))).))))))).))
)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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GGAAGCGCTGGATGCAGAGGTTTATCGATCGGTTCATGTTTTTCGTGCTAAACAAAAAATTGGCCAGGAAGAGATCGATGAACCGCTGCCTCCAGTGTCT
TCC
dot-bracket secondary structure
((((((((((((.((((.((((((((((((..(((.((........(((((........))))))).)))..)))))))))))).)))).))))))).))
)))
SIMILARITIES| miRBase ptc-MIR162a: 9e-54 PMRD ptc-miRf10577-akr: 9e-54 microPC miR162: 1e-43 | UniProt no hits RFAM MIR162_2: 2e-45 |
Identical with: ptc-miRf10577-akr from PMRD (MNEST052399) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
