miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST052400
species: Populus trichocarpa
source: PMRD, original name: ptc-miRf10578-akr

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATCGATGAACCGCTGCCTCC

miRNA*
 ATGCAGAGGTTTATCGATCG

mismatches: 2
bulges: 0
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pre-miRNA
 GGAAGCGCTGGATGCAGAGGTTTATCGATCGGTTCATGTTTTTCGTGCTAAACAAAAAATTGGCCAGGAAGAGATCGATGAACCGCTGCCTCCAGTGTCT
TCC

dot-bracket secondary structure
((((((((((((.((((.((((((((((((..(((.((........(((((........))))))).)))..)))))))))))).)))).))))))).))
)))


SIMILARITIES
miRBase ptc-MIR162a: 9e-54

PMRD ptc-miRf10577-akr: 9e-54

microPC miR162: 1e-43		UniProt no hits

RFAM MIR162_2: 2e-45

Identical with: ptc-miRf10577-akr from PMRD (MNEST052399)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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