ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10591-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATGCCTTTGGGTGAGATTGAGAG miRNA* CCCAATCTCCCTCAGAGGCTTCCA mismatches: 3 bulges: 0 |
pre-miRNA
GGAGAAGCTCCCAATCTCCCTCAGAGGCTTCCAATATCTCAGTTTATAGTAATTGCTTCAAATAATGAGAATGTTGGATGCCTTTGGGTGAGATTGAGAG
CTTACTCC
dot-bracket secondary structure
((((((((((.(((((((.(((((((((.((((((((((((((((..(((....)))..))))..)))).)))))))).))))))))).))))))).)))
))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
GGAGAAGCTCCCAATCTCCCTCAGAGGCTTCCAATATCTCAGTTTATAGTAATTGCTTCAAATAATGAGAATGTTGGATGCCTTTGGGTGAGATTGAGAG
CTTACTCC
dot-bracket secondary structure
((((((((((.(((((((.(((((((((.((((((((((((((((..(((....)))..))))..)))).)))))))).))))))))).))))))).)))
))).))))
SIMILARITIES| miRBase ptc-MIR477b: 5e-43 PMRD ptc-miRf10590-akr: 1e-56 microPC no hits | UniProt no hits RFAM MIR477: 6e-46 |
Identical with: ptc-miR477b from PMRD (MNEST051778) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
