ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10599-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTAGTCGAGATGCGTGCAAGCTGA miRNA* AGTTTGCGCGCACTTCGACTGATCC mismatches: 2 bulges: 0 |
pre-miRNA
CGGGCCAGTTTGCGCGCACTTCGACTGATCCCACGGGCCCTGAAGTTAGGCCTTGAATTTGCTCCTTAGAGATCACCAGTTCGAGTCTCACAAATCTCAA
GACCACTGGAAACTTACATGGTCGTTAACTTCAGGATCGTGGAATTAGTCGAGATGCGTGCAAGCTGACCCG
dot-bracket secondary structure
((((.(((((((((((((.((((((((((.((((((..(((((((((((..((((((((..(((....)))......))))))))...............
(((((.((........))))))).))))))))))).)))))).)))))))))).))))))))))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CGGGCCAGTTTGCGCGCACTTCGACTGATCCCACGGGCCCTGAAGTTAGGCCTTGAATTTGCTCCTTAGAGATCACCAGTTCGAGTCTCACAAATCTCAA
GACCACTGGAAACTTACATGGTCGTTAACTTCAGGATCGTGGAATTAGTCGAGATGCGTGCAAGCTGACCCG
dot-bracket secondary structure
((((.(((((((((((((.((((((((((.((((((..(((((((((((..((((((((..(((....)))......))))))))...............
(((((.((........))))))).))))))))))).)))))).)))))))))).))))))))))))).))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10598-akr: 1e-94 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10598-akr from PMRD (MNEST052420) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
