ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10605-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGCGTCTAGGTACAACATGG miRNA* GGGTTGGGCGTGGACGCGTCC mismatches: 5 bulges: 0 |
pre-miRNA
ACCGATGTGGGGTTGGGCGTGGACGCGTCCAGGTCTAACGTGGGGTTGGGCATTGTCGCGTTTAGACCTAATGTGGGGTTGGGCGTGGACGCGTCTAGGT
ACAACATGGGGTTGGT
dot-bracket secondary structure
((((((.(.(.((((..(.((((((((((((.(((((((.(.(.(((((((.............).)))))).).).))))))).)))))))))))).).
.)))).).).))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
ACCGATGTGGGGTTGGGCGTGGACGCGTCCAGGTCTAACGTGGGGTTGGGCATTGTCGCGTTTAGACCTAATGTGGGGTTGGGCGTGGACGCGTCTAGGT
ACAACATGGGGTTGGT
dot-bracket secondary structure
((((((.(.(.((((..(.((((((((((((.(((((((.(.(.(((((((.............).)))))).).).))))))).)))))))))))).).
.)))).).).))))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10604-akr: 7e-55 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10606-akr from PMRD (MNEST052428) |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
