ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10606-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGGTTGGGCGTGGACGCGTCTAGGT miRNA* GTGGACGCGTCCAGGTCTAACGTGG mismatches: 4 bulges: 0 |
pre-miRNA
CGTTGGGCGTGGACGCGTCCAGGTCTAACGTGGGGTTGGGCATTGTCGCGTTTAGACCTAATGTGGGGTTGGGCGTGGACGCGTCTAGGTACAAC
dot-bracket secondary structure
)((((..(.((((((((((((.(((((((.(.(.(((((((.............).)))))).).).))))))).)))))))))))).)..))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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CGTTGGGCGTGGACGCGTCCAGGTCTAACGTGGGGTTGGGCATTGTCGCGTTTAGACCTAATGTGGGGTTGGGCGTGGACGCGTCTAGGTACAAC
dot-bracket secondary structure
)((((..(.((((((((((((.(((((((.(.(.(((((((.............).)))))).).).))))))).)))))))))))).)..))))
SIMILARITIES| miRBase no hits PMRD ptc-miRf10605-akr: 2.0E-48 microPC no hits | UniProt no hits RFAM no hits |
Identical with: ptc-miRf10604-akr from PMRD (MNEST052426), ptc-miRf10605-akr from PMRD |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
