ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf10805-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTCTCGATACCAATCCCAACATTG miRNA* ATGTTGGGATACATATCGAGACTT mismatches: 3 bulges: 0 |
pre-miRNA
ATTATCAATGTTGGGATACATATCGAGACTTGCTTAATACTTGCCTTCATCATGGTTTTGGAAACATGGAGATTGGTAAGTTAGCAACATTGGTAAGTATT
AAGCATGTCTCGATACCAATCCCAACATTGGTAA
dot-bracket secondary structure
).(((((((((((((((...(((((((((.(((((((((((((((.((..((((..........))))..))...((......))......))))))))))
))))).)))))))))...))))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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ATTATCAATGTTGGGATACATATCGAGACTTGCTTAATACTTGCCTTCATCATGGTTTTGGAAACATGGAGATTGGTAAGTTAGCAACATTGGTAAGTATT
AAGCATGTCTCGATACCAATCCCAACATTGGTAA
dot-bracket secondary structure
).(((((((((((((((...(((((((((.(((((((((((((((.((..((((..........))))..))...((......))......))))))))))
))))).)))))))))...))))))))))))))).
SIMILARITIES| miRBase no hits PMRD ptc-miRf11699-akr: 4.0E-72 microPC no hits | UniProt no hits RFAM 1snoR71: 2.0E-15 |
Identical with: ptc-miRf10393-akr from PMRD (MNEST052215), ptc-miRf10392-akr from PMRD , ptc-miRf10806-akr from PMRD , ptc-miRf10813-akr from PMRD , ptc-miRf10814-akr from PMRD , ptc-miRf11688-akr from PMRD , ptc-miRf10381-akr from PMRD , ptc-miRf10382-akr from PMRD , ptc-miRf11699-akr from PMRD |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
