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Species belonging to selected taxon:
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Populus trichocarpa
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST053205
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf11383-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AGATGGGATTTCAGGTTGACCAAGC
miRNA*
TTTGGTTAAAGGGAATCGCCAGATGG
mismatches:
4
bulges:
3
View larger
pre-miRNA
GAAATCGCC
AGATGGGATTTCAGGTTGACCAAGC
TACACACATTTTTTTAGTTCCAGTTGAATGAGGTCGCCAGATGGGATCTCAGGTGGC
TTTGGTTAA
AGGGAATCGCCAGATGG
GATTTC
dot-bracket secondary structure
((((((.((
(..(((((((((...((((((((((
(((.............((((.....))))((((((.((....))))))))..)))))
.))))))))
..)))))).)))..)))
))))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf11536-akr
:
3e-29
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
download this record