miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Populus trichocarpa
ABOUT THIS RECORD
ID:
MNEST053382
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf11560-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GACAAAGACCTTCAGCTAGTG
miRNA*
CTAGCTGGAGGTCTTTATTTA
mismatches:
1
bulges:
0
View larger
pre-miRNA
GAAGTTTA
GACAAAGACCTTCAGCTAGTG
GCTCAGACAGTCAAAGTGACATTAGTGGTGCATAGAGCTATAAACCCATTAGCCG
CTAGCTGGAGGTCTTT
ATTTA
TACCTC
dot-bracket secondary structure
((.((.((
((.((((((((((((((((((
(((......(((.....)))....(.(((..(((....)))..))))...)))))
))))))))))))))))
.))))
.)).))
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record