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Species belonging to selected taxon:
Euphorbia esula
,
Hevea brasiliensis
,
Jatropha curcas
,
Linum usitatissimum
,
Manihot esculenta
,
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Bruguiera gymnorhiza
,
Populus trichocarpa
,
Ricinus communis
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST053384
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf11562-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTCGGTAACTACCGACGGAA
miRNA*
CTGTCGGTAGTTACCGACTG
mismatches:
1
bulges:
0
View larger
pre-miRNA
CTGTAATTTA
GTCGGTAACTACCGACGGAA
ATTTTCCATCGGTAGTTACCGACTGAATTACGGACGGAAAATGGT
CTGTCGGTAGTTACCGACTG
AATTA
CAG
dot-bracket secondary structure
((((((((((
(((((((((((((((((((.
(((((((.((.((((((........)))))).)).)))))))..)
))))))))))))))))))))
)))))
)))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf11563-akr
:
1e-40
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf11563-akr
from PMRD (
MNEST053385
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record