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Species belonging to selected taxon:
Populus trichocarpa
ABOUT THIS RECORD
ID:
MNEST053384
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf11562-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTCGGTAACTACCGACGGAA
miRNA*
CTGTCGGTAGTTACCGACTG
mismatches:
1
bulges:
0
View larger
pre-miRNA
CTGTAATTTA
GTCGGTAACTACCGACGGAA
ATTTTCCATCGGTAGTTACCGACTGAATTACGGACGGAAAATGGT
CTGTCGGTAGTTACCGACTG
AATTA
CAG
dot-bracket secondary structure
((((((((((
(((((((((((((((((((.
(((((((.((.((((((........)))))).)).)))))))..)
))))))))))))))))))))
)))))
)))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf11563-akr
:
1e-40
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf11563-akr
from PMRD (
MNEST053385
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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