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Species belonging to selected taxon:
Arachis duranensis
,
Arachis hypogaea
,
Arachis ipaensis
,
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Citrus aurantium
,
Citrus reticulata
,
Citrus sinensis
,
Citrus unshiu
,
Cucumis melo subsp. melo
,
Eucalyptus globulus
,
Eucalyptus gunnii
,
Euonymus alatus
,
Euphorbia esula
,
Fagus sylvatica
,
Fragaria vesca
,
Fragaria x ananassa
,
Glycine soja
,
Glycyrrhiza uralensis
,
Gossypium arboreum
,
Gossypium hirsutum
,
Gossypium raimondii
,
Hevea brasiliensis
,
Humulus lupulus
,
Jatropha curcas
,
Juglans hindsii x Juglans regia
,
Limnanthes alba
,
Linum usitatissimum
,
Lotus japonicus
,
Manihot esculenta
,
Medicago sativa
,
Paullinia cupana var. sorbilis
,
Phaseolus acutifolius
,
Phaseolus coccineus
,
Pisum sativum
,
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Prunus armeniaca
,
Prunus persica
,
Quercus petraea
,
Quercus robur
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Theobroma cacao
,
Trifolium pratense
,
Tropaeolum majus
,
Vitis shuttleworthii
,
Bruguiera gymnorhiza
,
Cajanus cajan
,
Carica papaya
,
Cicer arietinum
,
Citrus clementina
,
Glycine max
,
Arabidopsis thaliana
,
Vigna unguiculata
,
Vitis vinifera
,
Medicago truncatula
,
Brassica oleracea
,
Populus trichocarpa
,
Phaseolus vulgaris
,
Ricinus communis
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST053384
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf11562-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTCGGTAACTACCGACGGAA
miRNA*
CTGTCGGTAGTTACCGACTG
mismatches:
1
bulges:
0
View larger
pre-miRNA
CTGTAATTTA
GTCGGTAACTACCGACGGAA
ATTTTCCATCGGTAGTTACCGACTGAATTACGGACGGAAAATGGT
CTGTCGGTAGTTACCGACTG
AATTA
CAG
dot-bracket secondary structure
((((((((((
(((((((((((((((((((.
(((((((.((.((((((........)))))).)).)))))))..)
))))))))))))))))))))
)))))
)))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf11563-akr
:
1e-40
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf11563-akr
from PMRD (
MNEST053385
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record