ABOUT THIS RECORDspecies: Cynodon dactylon
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Cynodon dactylon Cynodon Eleusininae Cynodonteae Chloridoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCCT miRNA* GAGCTCCCTTCGATCCAATCC mismatches: 3 bulges: 0 |
pre-miRNA
ATGATGAATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGGAGTGGTCGGATGCAGCTGCCGGTTCATGGATACCTATCTGGTGCAGAAATGTTCCAT
GTTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCAGCATCTTCCCCTCGTGTTTGGATTGAAGGGAGCTCCTCTCTCTCTCT
dot-bracket secondary structure
..........((.((((((((((((((((((..((.(((((((((((((.((...((.((.((((.(((((.((((((((..(((((((.(((((...))
)))...)))))))...)))))))).))))).)))).)).))..)).))))....))))))))).)).)))))))))))))))))).)).........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGATGAATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGGAGTGGTCGGATGCAGCTGCCGGTTCATGGATACCTATCTGGTGCAGAAATGTTCCAT
GTTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCAGCATCTTCCCCTCGTGTTTGGATTGAAGGGAGCTCCTCTCTCTCTCT
dot-bracket secondary structure
..........((.((((((((((((((((((..((.(((((((((((((.((...((.((.((((.(((((.((((((((..(((((((.(((((...))
)))...)))))))...)))))))).))))).)))).)).))..)).))))....))))))))).)).)))))))))))))))))).)).........
SIMILARITIES| miRBase sof-MIR159c: 3e-67 PMRD sof-miR159c: 3e-67 microPC miR319: 8e-65 | UniProt no hits RFAM MIR159: 2e-63 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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