ABOUT THIS RECORDspecies: Bos taurus
miRNA family: miR-133b
source: miRNEST
Taxonomy by NCBI:
Bos taurus Bos Bovinae Bovidae Pecora Ruminantia Cetartiodactyla Laurasiatheria Eutheria Theria Mammalia Amniota Tetrapoda Sarcopterygii Euteleostomi Teleostomi Gnathostomata Vertebrata Craniata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTGGTCAAACGGAACCAAGT miRNA* TTGGTCCCCTTCAACCAGCTA mismatches: 5 bulges: 0 |
pre-miRNA
GCCCCCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTACAGCAGGGCT
dot-bracket secondary structure
...(((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCCCCCTGCTCTGGCTGGTCAAACGGAACCAAGTCCGTCTTCCTGAGAGGTTTGGTCCCCTTCAACCAGCTACAGCAGGGCT
dot-bracket secondary structure
...(((((((.((((((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))))).)))))))..
SIMILARITIES| miRBase mml-mir-133b: 2e-41 PMRD no hits microPC no hits | UniProt no hits RFAM mir-133: 4e-40 | most similar mature miRNAs |
Identical with: ptr-mir-133b from miRBase (MNEST030222) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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