ABOUT THIS RECORDspecies: Dioscorea alata
miRNA family: MIRf129
source: miRNEST
Taxonomy by NCBI:
Dioscorea alata Dioscorea Dioscoreaceae Dioscoreales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGAGGGATTCCTTCTTTG miRNA* AAGAGTGGATTCTTTCTGAATG mismatches: 2 bulges: 1 |
pre-miRNA
CTCTCAGCCTCAGCACCAAATGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCCAGTGTCCTTCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCT
TTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGA
dot-bracket secondary structure
...((((((..((..((((((((((((.(((.((((((((.((((.(((((.((...(((......)))...)).)))))..))((((((((......))
)))))))).)))))))).))))))))))).))))..)).)))..)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTCTCAGCCTCAGCACCAAATGAAGAGTGGATTCTTTCTGAATGTTGTAGTCCGCCAGTGTCCTTCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCT
TTGCTGATCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGA
dot-bracket secondary structure
...((((((..((..((((((((((((.(((.((((((((.((((.(((((.((...(((......)))...)).)))))..))((((((((......))
)))))))).)))))))).))))))))))).))))..)).)))..)))
SIMILARITIES| miRBase no hits PMRD ath-miRf10060-akr: 3e-17 microPC no hits | UniProt sp|P0CH32|UBQ4_ARATH: 2e-20 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
