ABOUT THIS RECORDspecies: Populus trichocarpa
source: PMRD, original name: ptc-miRf12536-akr
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACCGACGGAATTACCGAGGGA miRNA* CGTCGGTAGTTCCGTTGGTAAAA mismatches: 1 bulges: 0 |
pre-miRNA
GTTCACAGTTTACCGACGGAATTACCGAGGGAGTTTACCGACAGAAAATTCCGTCGGTAGTTCCGTTGGTAAAAATGACAC
dot-bracket secondary structure
..(((...((((((((((((((((((((.(((((((.(.....).))))))).))))))))))))))))))))..)))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
GTTCACAGTTTACCGACGGAATTACCGAGGGAGTTTACCGACAGAAAATTCCGTCGGTAGTTCCGTTGGTAAAAATGACAC
dot-bracket secondary structure
..(((...((((((((((((((((((((.(((((((.(.....).))))))).))))))))))))))))))))..)))...
SIMILARITIES| miRBase no hits PMRD ptc-miRf11428-akr: 2e-26 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
