ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR167
source: PMRD, original name: sbi-miR167c
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATGTTGCAGCTTCACT mismatches: 0 bulges: 1 |
pre-miRNA
NCTTTGNTGGTGTGAGAGGTTGAAGCTGCCAGCATGATCTGGTGGCCGGNCCGGCCGGCGTCTCTCAAGTGCGCTCGGATCGGAGACGCGTCGCCAGATC
ATGTTGCAGCTTCACTCTCTCGCAACCACCAAA
dot-bracket secondary structure
...(((.(((((((((((..(((((((((.((((((((((((((((((..(((((((((((((....)).)))).))).))))...)).)))))))))))
))))))))))))))..))))))).)))).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
NCTTTGNTGGTGTGAGAGGTTGAAGCTGCCAGCATGATCTGGTGGCCGGNCCGGCCGGCGTCTCTCAAGTGCGCTCGGATCGGAGACGCGTCGCCAGATC
ATGTTGCAGCTTCACTCTCTCGCAACCACCAAA
dot-bracket secondary structure
...(((.(((((((((((..(((((((((.((((((((((((((((((..(((((((((((((....)).)))).))).))))...)).)))))))))))
))))))))))))))..))))))).)))).))).
SIMILARITIES| miRBase sbi-MIR167c: 2e-64 PMRD zma-miR167i: 0.0000000000004 microPC miR167: 0.000002 | UniProt no hits RFAM MIR167_1: 4e-57 |
MOREmiRNEST target predictions
non-miRNEST targets: none
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
