ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR167
source: PMRD, original name: sbi-miR167d
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATGCTGTGCAGTTTCATC mismatches: 0 bulges: 1 |
pre-miRNA
GTGGTGCATCCTCTAGTAGCTGAAGCTGCCAGCATGATCTGATGAGGTGAGGTTTATTTGCTAGTTGGTCACAGGCTAACAGCATGATGGCCCAACAAAT
CAACGATCAGATCATGCTGTGCAGTTTCATCTGCTCGTGGATGCACAT
dot-bracket secondary structure
...((((((((.(.(((((.(((((((((((((((((((((((((.((..((((....((((.((((((.....))))))))))....))))..))...)
))....))))))))))))).))))))))).))))).).))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
GTGGTGCATCCTCTAGTAGCTGAAGCTGCCAGCATGATCTGATGAGGTGAGGTTTATTTGCTAGTTGGTCACAGGCTAACAGCATGATGGCCCAACAAAT
CAACGATCAGATCATGCTGTGCAGTTTCATCTGCTCGTGGATGCACAT
dot-bracket secondary structure
...((((((((.(.(((((.(((((((((((((((((((((((((.((..((((....((((.((((((.....))))))))))....))))..))...)
))....))))))))))))).))))))))).))))).).))))))))..
SIMILARITIES| miRBase sbi-MIR167d: 2e-80 PMRD zma-miR167e: 5e-16 microPC miR167: 0.0000005 | UniProt no hits RFAM MIR167_1: 8e-71 |
Identical with: sbi-MIR167d from miRBase (MNEST042522) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
