miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST054431
species: Sorghum bicolor
miRNA family: MIR167
source: PMRD, original name: sbi-miR167e

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GGTCATGCTGTAGTTTCATC

mismatches: 0
bulges: 1
View larger
pre-miRNA
 AGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGTCTTTATATATATTAATTACCTCTGATTTCTCCCTGACTGTTATGGATCGATGAAT
TCAGATATGAGGGGAAGGAAGAAAGAGGAATAATGAGCATCAGGTCATGCTGTAGTTTCATCCGCTGGTGGGAGCACAT

dot-bracket secondary structure
....((((.((((.(((.(((((((((((.((((((((((((((.(((.......((((.((.(((((..(((((((((...((((.(((((......))
)))))))...)))).)))))...))))))))))))))))))))))))))))))))))))))).))).))))..))))..


SIMILARITIES
miRBase sbi-MIR167e: 7e-99

PMRD sof-miR167b: 4e-42

microPC miR167: 2e-25		UniProt no hits

RFAM MIR167_1: 3e-89

Identical with: sbi-MIR167e from miRBase (MNEST042523)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record

references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"



Liczniki na strone;