miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Panicum virgatum, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Cenchrus ciliaris, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST054431
species: Sorghum bicolor
miRNA family: MIR167
source: PMRD, original name: sbi-miR167e

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GGTCATGCTGTAGTTTCATC

mismatches: 0
bulges: 1
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pre-miRNA
 AGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGTCTTTATATATATTAATTACCTCTGATTTCTCCCTGACTGTTATGGATCGATGAAT
TCAGATATGAGGGGAAGGAAGAAAGAGGAATAATGAGCATCAGGTCATGCTGTAGTTTCATCCGCTGGTGGGAGCACAT

dot-bracket secondary structure
....((((.((((.(((.(((((((((((.((((((((((((((.(((.......((((.((.(((((..(((((((((...((((.(((((......))
)))))))...)))).)))))...))))))))))))))))))))))))))))))))))))))).))).))))..))))..


SIMILARITIES
miRBase sbi-MIR167e: 7e-99

PMRD sof-miR167b: 4e-42

microPC miR167: 2e-25		UniProt no hits

RFAM MIR167_1: 3e-89

Identical with: sbi-MIR167e from miRBase (MNEST042523)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"



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