ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR167
source: PMRD, original name: sbi-miR167h
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTG miRNA* GATCATCTGGCAGTTTCATT mismatches: 0 bulges: 1 |
pre-miRNA
TGAAGCTGCCAGCATGATCTGAAAGCATACGAGTCCTTCGTTATCATCTGATGAAAGAAATAGATGATCAGATCATCTGGCAGTTTCATT
dot-bracket secondary structure
((((((((((((.(((((((((...(((.....((.(((((((.....))))))).)).....))).)))))))))))))))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
TGAAGCTGCCAGCATGATCTGAAAGCATACGAGTCCTTCGTTATCATCTGATGAAAGAAATAGATGATCAGATCATCTGGCAGTTTCATT
dot-bracket secondary structure
((((((((((((.(((((((((...(((.....((.(((((((.....))))))).)).....))).)))))))))))))))))))))..
SIMILARITIES| miRBase sbi-MIR167h: 4e-46 PMRD osa-miRf10478-akr: 0.000000004 microPC miR167: 0.000000004 | UniProt no hits RFAM MIR167_1: 8e-45 |
Identical with: sbi-MIR167h from miRBase (MNEST042526) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Nare, Nature. 457:551-556(2009)., "The Sorghum bicolor genome and the diversification of grasses"
