ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR169
source: PMRD, original name: sbi-miR169b
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTTGTCCTTGGCTA mismatches: 3 bulges: 0 |
pre-miRNA
CAGCCAAGGATGACTTGCCGGATATGTGCATGCATATGTTACAAGGCAGCATATGCACCCTGTTACAAGCCTGCCTGTTCTCCGGCAAGTTGTCCTTGGC
TA
dot-bracket secondary structure
.(((((((((..((((((((((.(((.(((.((...(((.(((.((..((....)).)).))).))).)).))).)))..))))))))))..))))))))
).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA, PLoS Biol. 3:e13(2005)., "Sorghum genome sequencing by methylation filtration"
CAGCCAAGGATGACTTGCCGGATATGTGCATGCATATGTTACAAGGCAGCATATGCACCCTGTTACAAGCCTGCCTGTTCTCCGGCAAGTTGTCCTTGGC
TA
dot-bracket secondary structure
.(((((((((..((((((((((.(((.(((.((...(((.(((.((..((....)).)).))).))).)).))).)))..))))))))))..))))))))
).
SIMILARITIES| miRBase sbi-MIR169b: 4e-53 PMRD bdi-miR169b: 0.00000002 microPC miR169: 0.00008 | UniProt no hits RFAM MIR169_2: 6e-52 |
Identical with: sbi-MIR169b from miRBase (MNEST042530) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Maher C, Timmermans M, Stein L, Ware D, Proc IEEE CSB :718-723(2004)., "Identifying microRNAs in plant genomes"
[2] Bedell JA, Budiman MA, Nunberg A, Citek RW, Robbins D, Jones J, Flick E, Rholfing T, Fries J, Bradford K, McMenamy J, Smith M, Holeman H, Roe BA, Wiley G, Korf IF, Rabinowicz PD, Lakey N, McCombie WR, Jeddeloh JA, Martienssen RA, PLoS Biol. 3:e13(2005)., "Sorghum genome sequencing by methylation filtration"
