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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST054468
species: Sorghum bicolor
miRNA family: MIR319
source: PMRD, original name: sbi-miR319

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGACTGAAGGGTGCTCCC

miRNA*
 AGAGCGTCCTTCAGTCCACTC

mismatches: 4
bulges: 1
View larger
pre-miRNA
 CTGCCGCCATGGTTGTGATATGGCCGGATGGAAGAGAGCGTCCTTCAGTCCACTCAGGGGCGGTGCTAGGGTCGAATTAGCTGCCGACTCATTCACCCAC
ATGCCAAGCAAACGGCCATGGAAACGAGCTAGCTTTGCAGATGAGTGAATGAAGCGGGAGGTAAAAGCTTCGATCTCGCACCATCTTTGCTTGGACTGAA
GGGTGCTCCCTCCTCCCCTCCTTAATTGTTTACTTTACCCATGGCGCAG

dot-bracket secondary structure
((((.(((((((..((((...((..(((.(((.(.((((..(((((((((((..(((((..(((((..(((((((((((.((.(((..((((((((.((.
.(((.((((....(((..((....)).))).)))).)))..)).))))))))..))).)).)))....)))))))).)))))..)))))..)))))))))
))..))))).))))))...))........)))).....)))))))))))


SIMILARITIES
miRBase sbi-MIR319: 2e-140

PMRD zma-miR319b: 1e-92

microPC miR319: 2e-41		UniProt no hits

RFAM MIR159: 2e-109

Identical with: sbi-MIR319 from miRBase (MNEST042563)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"



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