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Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST054468
species: Sorghum bicolor
miRNA family: MIR319
source: PMRD, original name: sbi-miR319

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGACTGAAGGGTGCTCCC

miRNA*
 AGAGCGTCCTTCAGTCCACTC

mismatches: 4
bulges: 1
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pre-miRNA
 CTGCCGCCATGGTTGTGATATGGCCGGATGGAAGAGAGCGTCCTTCAGTCCACTCAGGGGCGGTGCTAGGGTCGAATTAGCTGCCGACTCATTCACCCAC
ATGCCAAGCAAACGGCCATGGAAACGAGCTAGCTTTGCAGATGAGTGAATGAAGCGGGAGGTAAAAGCTTCGATCTCGCACCATCTTTGCTTGGACTGAA
GGGTGCTCCCTCCTCCCCTCCTTAATTGTTTACTTTACCCATGGCGCAG

dot-bracket secondary structure
((((.(((((((..((((...((..(((.(((.(.((((..(((((((((((..(((((..(((((..(((((((((((.((.(((..((((((((.((.
.(((.((((....(((..((....)).))).)))).)))..)).))))))))..))).)).)))....)))))))).)))))..)))))..)))))))))
))..))))).))))))...))........)))).....)))))))))))


SIMILARITIES
miRBase sbi-MIR319: 2e-140

PMRD zma-miR319b: 1e-92

microPC miR319: 2e-41		UniProt no hits

RFAM MIR159: 2e-109

Identical with: sbi-MIR319 from miRBase (MNEST042563)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"



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