ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR172
source: PMRD, original name: sly-miR172b
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCAT miRNA* GTAGCATCATCAAGATTCATA mismatches: 1 bulges: 0 |
pre-miRNA
ATGTAGCATCATCAAGATTCATACATGAAAATTAAGAGGCAAGGTTAAATATGTAGCTTTAATTTGAAATGAAAAATATAATATATCATGACCATGTCTA
TTTATTTCAAAGTGAGAATCTTGATGATGCTGCAT
dot-bracket secondary structure
((((((((((((((((((((.(((.(((((......(((((.(((((...(((((......((((........))))....)))))..))))).))))).
....)))))..))).))))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
ATGTAGCATCATCAAGATTCATACATGAAAATTAAGAGGCAAGGTTAAATATGTAGCTTTAATTTGAAATGAAAAATATAATATATCATGACCATGTCTA
TTTATTTCAAAGTGAGAATCTTGATGATGCTGCAT
dot-bracket secondary structure
((((((((((((((((((((.(((.(((((......(((((.(((((...(((((......((((........))))....)))))..))))).))))).
....)))))..))).))))))))))))))))))))
SIMILARITIES| miRBase sly-MIR172b: 1e-72 PMRD ptc-miRf11023-akr: 0.0000001 microPC miR172: 0.000002 | UniProt no hits RFAM mir-172: 0.0000005 |
Identical with: sly-MIR172b from miRBase (MNEST041543) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
deep sequencing data evidence
references
[1] Zhang J, Zeng R, Chen J, Liu X, Liao Q, Gene. 423:1-7(2008)., "Identification of conserved microRNAs and their targets from Solanum lycopersicum Mill"
