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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Cynodon dactylon, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST054630
species: Saccharum officinarum
miRNA family: MIR159
source: PMRD, original name: sof-miR159c

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CTTGGATTGAAGGGAGCTCCT

miRNA*
 GAGCTCCCTTCGATCCAATCC

mismatches: 3
bulges: 0
View larger
pre-miRNA
 TGAAGACGACGACGAAGAAGAAGATGGCGAAGAAAAGTGATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGAAGTGGTCGGTTGCAGCTGCCGGTTC
ATGGATGCCTCTCTGGTGCAGCAATGACTAATGCTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCATCATCTTTCCCTCGTGCT
TGGATTGAAGGGAGCTCCTCTCTCTTTCCTCTCTCTCT

dot-bracket secondary structure
...(((.((.((.(((..(((.(((.((........)).)))...((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.((
(((.((((((....(((((((...((((....).))).))))))).....)))))).))))).)))).)).)))))).))))....))))))))).)).)
)))))))))))))))))...)))..))).)))))))..


SIMILARITIES
miRBase sof-MIR159c: 1e-119

PMRD sbi-miR159b: 6e-100

microPC miR319: 6e-94		UniProt no hits

RFAM MIR159: 3e-90

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"



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