ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR159
source: PMRD, original name: sof-miR159e
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAAGGAGCTCTT miRNA* AGCTCCTATCATTCCAATGA mismatches: 4 bulges: 0 |
pre-miRNA
CTGATGCTTGGATTTGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCGTTCTGAAGGGTGGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTCA
TCATGTATGTGTGTATGTATTTTCGAGAGGGAGGAGAGGAGCTAGACTCTCACGGTGGTCGTCTTTGAGATAGGCTTGTGGTTTGCATGACCGAAGAGCT
GCACCGTCCCCTTGCTGGCCGCTCTTTGGATTGAAAGGAGCTCTTGCATCTGATCCATCCATCC
dot-bracket secondary structure
..((((..((((((.((.(((((((((((.(((.(((((.((..((((((....(((((((((.(.(((..(((.(((((....((((...(((((((((
..((((((....))))))......((((.((.((((((........))))).).....)).)))))))))))))...))))....))))).)))..))).
).))))..))))))).))))..)).))))).))).)))))))).))).)).))))))..)))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
CTGATGCTTGGATTTGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCGTTCTGAAGGGTGGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTCA
TCATGTATGTGTGTATGTATTTTCGAGAGGGAGGAGAGGAGCTAGACTCTCACGGTGGTCGTCTTTGAGATAGGCTTGTGGTTTGCATGACCGAAGAGCT
GCACCGTCCCCTTGCTGGCCGCTCTTTGGATTGAAAGGAGCTCTTGCATCTGATCCATCCATCC
dot-bracket secondary structure
..((((..((((((.((.(((((((((((.(((.(((((.((..((((((....(((((((((.(.(((..(((.(((((....((((...(((((((((
..((((((....))))))......((((.((.((((((........))))).).....)).)))))))))))))...))))....))))).)))..))).
).))))..))))))).))))..)).))))).))).)))))))).))).)).))))))..)))).
SIMILARITIES| miRBase sof-MIR159e: 2e-149 PMRD sof-miR159a: 7e-131 microPC miR319: 1e-18 | UniProt no hits RFAM MIR159: 1e-61 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
