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Species belonging to selected taxon:

Agrostis stolonifera, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST054678
species: Triticum aestivum
miRNA family: MIR167
source: PMRD, original name: tae-miR167

Taxonomy by NCBI:
Triticum aestivum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTA

miRNA*
 GATCAAACAAGAAACGCTGCGGCAGCCTCACT

mismatches: 3
bulges: 13
View larger
pre-miRNA
 CTGCCCAAGGGAACGAGTGAAGCTGCCAGCATGATCTAGCTCCGAGTGATCAAACAAGAAACGCTGCGGCAGCCTCACTTCTTCCCGCCGTTGGGCACAA
CTACTTCT

dot-bracket secondary structure
.((((((((((((.((((((.((((((.((((((((...........)))))............))))))))).)))))).)))))....)))))))...
........


SIMILARITIES
miRBase tae-MIR167: 1e-56

PMRD zma-miR167d: 2e-20

microPC miR167: 0.000001		UniProt no hits

RFAM MIR167_1: 3e-17

Identical with: tae-MIR167 from miRBase (MNEST042638)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
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references
[1] Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q, Genome Biol. 8:R96(2007)., "Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)"



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